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ItemSusceptibility of invertebrate larvae to predators: how common are post-capture larval defenses?(Georgia Institute of Technology, 1999-12-30) Bullard, Stephan G. ; Lindquist, Niels Lyle ; Hay, Mark E.Predation is believed to be a major source of mortality for larvae of benthic invertebrates, but the palatability of larvae commonly found in the water column has rarely been assessed. Larval palatability assays were conducted by collecting live invertebrate larvae from a temperate field site and offering them to a suite of common predators (the fishes Lagodon rhomboides, Leiostomus xanthurus, and Monacanthus hispidus and the hard coral Oculina arbuscula). By crushing larvae that were rejected intact and re-offering them to predators, it was possible to distinguish between defenses based on morphological and chemical characteristics of the larvae. Additionally, abundance data were collected for taxonomic groups of larvae at our sampling location. The majority of invertebrate larvae were palatable to consumers. Most predators readily consumed polychaete larvae, barnacle nauplii, bivalve veligers, shrimp zoeae, crab megalopae, phoronid actinotrochs, and hemichordate tornaria (which together accounted for 65% of meroplankton abundance), suggesting that these larvae lacked effective morphological or chemical defenses. Against at least 1 fish predator, a significant number of gastropod veligers, barnacle cyprids, crab zoeae, and stomatopod larvae (which accounted for 34% of meroplankton abundance) appeared to be morphologically defended. Larvae from these groups tended to be rejected whole, but were consumed by fishes once they were crushed. A significant number of nemertean pilidia, asteroid bipinnaria, and cnidarian planulae (which accounted for only 0.2% of meroplankton abundance) were rejected both whole and crushed, suggesting that some species or individuals within these taxa may be chemically defended. Thus, the majority of larvae from this assemblage of temperate meroplankton lacked physical or chemical defenses against potential predators (3 fishes and 1 cnidarian). Among the remaining larvae, physical resistance to predators was much more common than chemical resistance.
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ItemDynamics and Thermodynamics of β-Hairpin Assembly: Insights from Various Simulation Techniques(Georgia Institute of Technology, 1999-12) Kolinski, Andrzej ; Ilkowski, Bartosz ; Skolnick, JeffreySmall peptides that might have some features of globular proteins can provide important insights into the protein folding problem. Two simulation methods, Monte Carlo Dynamics (MCD), based on the Metropolis sampling scheme, and Entropy Sampling Monte Carlo (ESMC), were applied in a study of a high-resolution lattice model of the C-terminal fragment of the B1 domain of protein G. The results provide a detailed description of folding dynamics and thermodynamics and agree with recent experimental findings (Munoz et al., 1997. Nature. 390:196–197). In particular, it was found that the folding is cooperative and has features of an all-or-none transition. Hairpin assembly is usually initiated by turn formation; however, hydrophobic collapse, followed by the system rearrangement, was also observed. The denatured state exhibits a substantial amount of fluctuating helical conformations, despite the strong b-type secondary structure propensities encoded in the sequence.
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ItemReduced mobility is associated with compensatory feeding and increased diet breadth of marine crabs(Georgia Institute of Technology, 1999-11-03) Stachowicz, John J. ; Hay, Mark E.Direct effects of predation have been widely recognized as important in affecting prey population dynamics and evolution. However, less attention has been devoted to the consequences of indirect effects of predators on prey behavior. For example, to avoid predation many animals restrict their activities to physical refugia and adopt low-mobility lifestyles, yet the consequences of these anti-predator behaviors for foraging and diet selection are relatively unknown. In this study we examine the relationships between mobility, feeding preferences, and compensatory feeding for 3 species of marine decapod crabs feeding on seaweeds in North Carolina, USA. Low mobility and high site fidelity of crabs were associated with a broad, non-selective diet and compensatory feeding. The majid Mithrax forceps exhibited the lowest mobility, highest site fidelity, and least selective diet of the 3 species, whereas another majid Libinia dubia was intermediate in both mobility and selectivity, and the xanthid Panopeus herbstii had the greatest mobility and narrowest diet. Of these 3 crabs, only M. forceps compensated for low food quality by increasing consumption rates in single food-species feeding assays. This may be because M. forceps is resistant to (or tolerant of) seaweed chemical defenses, while other crab species are not. The ability to consume, and presumably subsist on, a wide variety of potential foods including those defended from more mobile consumers may facilitate a low-mobility lifestyle, allowing the crab to minimize movement and reduce exposure to predators. Low mobility and high site-fidelity may thus facilitate the formation and use of associational refuges with sessile benthic organisms that are resistant to predators; these associations can have important community and ecosystem-wide consequences.
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ItemMutualism and coral persistence: the role of herbivore resistance to algal chemical defense(Georgia Institute of Technology, 1999-09) Stachowicz, John J. ; Hay, Mark E.Because seaweeds uncontrolled by herbivores can overgrow and kill corals, competition can exclude corals from temperate latitudes where herbivores generally fail to control seaweed biomass. In this study, we show that the coral Oculina arbuscula persists on reefs in temperate North Carolina where seaweeds are common by harboring the omnivorous crab Mithrax forceps, which removes seaweeds and invertebrates growing on or near the coral. In the field, corals from which crabs are experimentally removed develop a dense cover of epibionts, exhibiting reduced growth and increased mortality relative to corals with crabs, which remain epibiont-free. This crab is unusual in that it readily consumes all local seaweeds in laboratory choice assays and is not deterred by chemical defenses that suppress feeding by local fishes, sea urchins, and other crabs. This allows Mithrax to defend corals from overgrowth by chemically noxious seaweeds like Dictyota and Sargassum that are avoided by most local herbivores. However, further field manipulations under reduced light conditions demonstrate that the outcome of the crab–coral interaction is context-dependent: crabs only benefit corals in well-lit areas where seaweeds are abundant. Field observations and tethering experiments show that, by living in association with Oculina, Mithrax gains a refuge from predation. Additionally, crabs grow faster when associated with live corals than with structurally equivalent dead corals, apparently because they are able to consume lipid-rich coral mucus. This mucus provides a dietary supplement that may help corals attract and retain low-mobility symbionts such as Mithrax, securing for the coral long-term and predictable protection against competitors. Structurally complex but competitively inferior organisms, like some corals and coralline algae, provide the biogenic habitat complexity upon which many other species depend. Because these sessile organisms may be dependent on symbionts to remove superior competitors, mutualisms can play an important, but currently underappreciated, role in structuring marine communities where biotic interactions are intense. In this study, the mutualism between Oculina and Mithrax promotes the persistence of both species in habitats from which they might otherwise be excluded by competition and predation.
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ItemExtensive bloom of a N₂-fixing diatom/cyanobacterial association in the tropical Atlantic Ocean(Georgia Institute of Technology, 1999-08-20) Carpenter, Edward J. ; Montoya, Joseph P. ; Burns, James ; Mulholland, Margaret R. ; Subramaniam, Ajit ; Capone, Douglas G.We encountered an extensive bloom of the colonial diatom Hemiaulus hauckii along a 2500 km cruise track off the NE coast of South America in autumn 1996. Each diatom cell contained the heterocystous, N₂-fixing cyanobacterial endosymbiont Richelia intracellularis. Surface Richelia heterocyst (and filament) densities increased from <100 to >10⁶ heterocyst l⁻¹ in the bloom. Total abundance ranged from 10⁶ heterocyst m⁻² outside the bloom to over 10¹⁰ heterocyst m⁻² within the bloom. Rates of primary production averaged 1.2 g C m⁻² d⁻¹, higher than typical for oligotrophic open ocean waters. N₂ fixation during the bloom by the Richelia/Hemiaulus association added an average of 45 mg N m⁻² d⁻¹, to the water column. The relative importance of NH₄⁺ uptake over the course of the bloom increased from 0 to 42% of total N uptake by the Hemiaulus/Richelia association. N2 fixation by Richelia exceeded estimates of 'new' N flux via NO₃ diffusion from deep water and, together with additional N₂ fixation by the cyanobacterium Trichodesmium, could supply about 25% of the total N demand through the water column during the bloom. Suspended particles and zooplankton collected within the bloom were depleted in ¹⁵N, reflecting the dominant contribution of N₂ fixation to the planktonic N budget. The bloom was spatially extensive, as revealed by satellite imagery, and is calculated to have contributed about 0.5 Tg N to the euphotic zone. Such blooms may represent an important and previously unrecognized source of new N to support primary production in nutrient-poor tropical waters. Furthermore, this bloom demonstrates that heterocystous cyanobacteria can also make quantitatively important contributions of N in oceanic water column environments.
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ItemDe novo simulations of the folding thermodynamics of the GCN4 leucine zipper(Georgia Institute of Technology, 1999-07) Mohanty, Debasisa ; Kolinski, Andrzej ; Skolnick, JeffreyEntropy Sampling Monte Carlo (ESMC) simulations were carried out to study the thermodynamics of the folding transition in the GCN4 leucine zipper (GCN4-lz) in the context of a reduced model. Using the calculated partition functions for the monomer and dimer, and taking into account the equilibrium between the monomer and dimer, the average helix content of the GCN4-lz was computed over a range of temperatures and chain concentrations. The predicted helix contents for the native and denatured states of GCN4-lz agree with the experimental values. Similar to experimental results, our helix content versus temperature curves show a small linear decline in helix content with an increase in temperature in the native region. This is followed by a sharp transition to the denatured state. van’t Hoff analysis of the helix content versus temperature curves indicates that the folding transition can be described using a two-state model. This indicates that knowledge-based potentials can be used to describe the properties of the folded and unfolded states of proteins.
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ItemQueen Dispersal Strategies in the Multiple-Queen Form of the Fire Ant Solenopsis invicta(Georgia Institute of Technology, 1999-06) DeHeer, Christopher J. ; Goodisman, Michael ; Ross, Kenneth G.Newly produced queens in the multiple-queen (polygyne) form of the fire ant Solenopsis invicta show dramatic variation in dispersal patterns, and this variation is influenced by genotypic variation at a single locus associated with the genetic marker Gp-9. Heavy, homozygous Gp-9BB queens exhibit the highest vagility among polygyne queens and are strongly attracted to the open, disturbed-habitat patches that characteristically attract queens of the single-queen (monogyne) form (all of which possess genotype Gp- 9BB). Intermediate weight, heterozygous Gp-9Bb queens exhibit a mixed dispersal strategy: some remain in the area near their natal nest, while others disperse to land in the same disturbed-habitat patches as Gp-9BB queens. Light, homozygous Gp-9bb queens appear to lack the energy reserves needed to take part in mating flights in substantial numbers. Most queens that disperse from their natal nest site apparently fail to infiltrate mature nests to reproduce. However, consistent with the expectations of game-theoretical models for the evolution of dispersal, the low realized success of dispersing queens does not prevent relatively large numbers of them from dispersing. Furthermore, the results presented here are consistent with the hypothesis that the reproductive syndrome that characterizes polygyny in S. invicta is largely controlled by a single locus.
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ItemRates and Pathways of Carbon Oxidation in Permanently Cold Arctic Sediments(Georgia Institute of Technology, 1999-05-03) Kostka, Joel E. ; Thamdrup, Bo ; Nohr Glud, Ronnie ; Canfield, Donald E.We report here a comprehensive study of the rates and pathways of carbon mineralization in Arctic sediments. Four sites were studied at 115 to 329 m water depth in fjords on Svalbard and in coastal Norway. The Svalbard coastal region is characterized by permanently cold bottom water temperatures of -1.7 to 2.6 °C. Carbon oxidation (avg = 20 to 400 nmol d-') and sulfate reduction rates (avg = 10 to 350 nmol cm-3 d-l) were measured at high resolution to 10 cm depth in sediment incubation~ T. he distribution of oxidants available for microbial respiration was determined through porewater and solid phase geochemistry. By comparing the distribution of potential oxidants to the depth-integrated mineralization rates, the importance of various respiratory pathways to the oxidation of organic C could be quantified. Integrated C oxidation rates measured in sediment incubations (11 to 24 mm01 m-2 d-') were comparable to within a factor of 2 to dissolved inorganic carbon (DIC) fluxes measured in situ using a benthic lander. Sulfate reduction was the dominant microbial respiration pathway (58 to 92% of total C oxidation) followed by Fe(II1) reduction (10 to 26%), oxygen (5 to 14 %), and nitrate respiration (2 to 3%). At sediment depths where sulfate reduction was dominant, C oxidation equivalents, calculated from independently measured sulfate reduction rates, matched DIC production rates in incubations. Sediment geochemistry revealed that the same vertical sequence of oxidants is reduced/respired in these Arctic sediments as in temperate continental shelf sediments of equivalent water depths. Microbial communities in permanently cold Arctic sediments exhibited mineralization rates and pathways comparable to temperate nearshore environments. This study completely partitioned C oxidation pathways, showing a predominance of sulfate respiration and a substantial contribution of Fe(II1) reduction to organic matter mineralization in Arctic sediments for the first time. Microbial communities in cold sediments exposed to relatively high C deposition appear to respond to the input or availability of organic matter rather than to temperature.
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ItemTranslational Suppressors and Antisuppressors Alter the Efficiency of the Ty1 Translational Frameshift(Georgia Institute of Technology, 1999-05) Burck, Carol L. ; Chernoff, Yury O. ; Liu, Rong ; Farabaugh, Philip J. ; Liebman, Susan W.Certain viruses, transposons, and cellular genes have evolved specific sequences that induce high levels of specific translational errors. Such “programmed misreading” can result in levels of frameshifting or nonsense codon readthrough that are up to 1,000-fold higher than normal. Here we determine how a number of mutations in yeast affect the programmed misreading used by the yeast Ty retrotransposons. These mutations have previously been shown to affect the general accuracy of translational termination. We find that among four nonsense suppressor ribosomal mutations tested, one (a ribosomal protein mutation) enhanced the efficiency of the Ty1 frameshifting, another (an rRNA mutation) reduced frameshifting, and two others (another ribosomal protein mutation and another rRNA mutation) had no effect. Three antisuppressor rRNA mutations all reduced Ty1 frameshifting; however the antisuppressor mutation in the ribosomal protein did not show any effect. Among nonribosomal mutations, the allosuppressor protein phosphatase mutation enhanced Ty1 frameshifting, whereas the partially inactive prion form of the release factor eRF3 caused a slight decrease, if any effect. A mutant form of the other release factor, eRF1, also had no effect on frameshifting. Our data suggest that Ty frameshifting is under the control of the cellular translational machinery. Surprisingly we find that translational suppressors can affect Ty frameshifting in either direction, whereas antisuppressors have either no effect or cause a decrease.
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ItemReducing predation through chemically mediated camouflage: indirect effects of plant defenses on herbivores(Georgia Institute of Technology, 1999-03) Stachowicz, John J. ; Hay, Mark E.Herbivores often specialize on particular hosts that provide both food and shelter from natural enemies. It is thus often unclear whether a plant’s value as a food or its value as a safe shelter has played a larger role in selecting for specialization. Decorator crabs offer a novel opportunity to investigate the relative effects of diet vs. natural enemies in selecting for specialization because these crabs place plant “shelter” on their backs as camouflage but need not use these plants as food, thus decoupling the plant’s value as a food from its value as a shelter. In this study, we show that juveniles of the decorator crab Libinia dubia selectively decorate with the chemically defended brown alga Dictyota menstrualis but treat this plant as a low-preference food. Common omnivorous fishes that are potential predators of Libinia avoid consuming Dictyota due to the alga’s potent chemical defenses. In the field, juvenile crabs decorated with Dictyota experience significantly less predation than crabs decorated with an alga that is not chemically noxious to local fishes, and the Dictyota metabolite that most strongly deters feeding by fishes is the specific metabolite that determines decoration choice by this crab. Thus, by behaviorally sequestering defenses from this chemically noxious plant, these small crabs reduce their susceptibility to predation. In the presence of predators, juvenile crabs reduce their rate of feeding, but not of decorating, suggesting that antipredator behavior such as decorating takes precedence over feeding. In addition, only juvenile crabs that are of a size that can be consumed by local fishes decorate at all. Adult crabs that have carapace widths exceeding the gape size of co-occurring fishes do not decorate in either the field or the laboratory. Apparently predation, rather than diet selection, drives decoration specialization in Libinia, highlighting how indirect effects of plant secondary chemistry can impact herbivore behavior, ecology, and evolution.